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A multi-task learning based approach to biomedical entity relation extraction

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Indexed by:会议论文

Date of Publication:2018-01-01

Included Journals:CPCI-S

Page Number:680-682

Key Words:Neural Networks; Multi-task Learning; Relation Extraction

Abstract:Automatic extraction of high-quality biomedical entity relations from biomedical texts plays an important role in biomedical text mining. Currently, existing methods generally focus on training a single task model for a specific task (e.g., drug-drug interaction extraction, protein-protein interaction extraction), ignoring the correlation among multiple tasks. To solve the problem, we used neural network-based multi-task learning method to explore the correlation among multiple biomedical relation extraction tasks. In our study, we constructed a fully-shared model (FSM) and a shared-private model (SPM) and further proposed an attention-based main-auxiliary model (Att-MAM). Experimental results on five public biomedical relation extraction datasets show that the multi-task learning can effectively learn the shared information among multiple tasks and obtain better performance than the single task method.

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