Release Time:2020-04-09  Hits:

Indexed by: Journal Papers

Date of Publication: 2020-03-10

Journal: Angewandte Chemie (International ed. in English)

Included Journals: PubMed

ISSN: 1521-3773

Key Words: aptamers,biosensors,in vitro selection,paper-based analytical devices,protein degradation

Abstract: Protein biomarkers often exist as degradation fragments in biological samples, and affinity agents derived using a purified protein may not recognize them, limiting their value for clinical diagnosis. Herein, we present a method to overcome this issue, by selecting aptamers against a degraded form of the toxin B protein, which is a marker for diagnosing toxigenic Clostridium difficile infections. This approach has led to isolation of a DNA aptamer that recognizes degraded toxin B, fresh toxin B, and toxin B spiked into human stool samples. DNA aptamers selected using intact recombinant toxin B failed to recognize degraded toxin B, which is the form present in stored stool samples. Using this new aptamer, we produced a simple paper-based analytical device for colorimetric detection of toxin B in stool samples, or in the NAP1 strain of Clostridium difficile. The combined aptamer-selection and paper-sensing strategy can expand the practical utility of DNA aptamers in clinical diagnosis.© 2020 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.